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Vaccinations for Indonesia: what NaTHNaC actually recommends

By Covered Abroad Research Desk · Last verified July 2026

The UK's national travel health service recommends the routine UK schedule plus hepatitis A for anyone not already vaccinated. Hepatitis B is worth considering because Indonesia has intermediate-to-high prevalence, typhoid vaccination is recommended for most travellers, and Japanese encephalitis occurs countrywide year-round. Malaria is the one that genuinely depends on where you are going — Papua is not Bali, and neither is Jakarta.

The core list

NaTHNaC — the National Travel Health Network and Centre — writes the UK's country travel health guidance. For Indonesia it comes down to a short list plus one big geographic caveat.

Routine schedule first. Be current on the UK courses and boosters for your age and history.

Hepatitis A — recommended for all previously unvaccinated travellers, on the grounds that the vaccine is well tolerated and gives long-lasting protection.

Typhoid — vaccination is recommended for most travellers, with the emphasis raised for people visiting friends and relatives, long-stay travellers, and anywhere sanitation and food hygiene may be poor.

Hepatitis B — Indonesia is "considered to have an intermediate or high prevalence of hepatitis B", which changes the calculation for a lot of people who would skip it elsewhere.

Japanese encephalitis — "JE occurs countrywide, including Indonesian Borneo, with year-round risk". Vaccination is considered rather than routine, weighted by how long you are staying and how rural.

There is also a stated risk of chikungunya, and rabies is a risk with cases reported in domestic animals — which in Bali is a live and well-documented issue.

Source: NaTHNaC / TravelHealthPro — Indonesia

Yellow fever: no risk, but a certificate requirement

The same pairing that confuses people about Malaysia applies here.

There is no risk of yellow fever in Indonesia. There is separately a certificate requirement under the International Health Regulations, triggered by where you have come from rather than by Indonesia itself — arriving from, or transiting through, a country with transmission risk.

So a direct flight and a routing with a long layover can produce different requirements for the same destination.

Source: NaTHNaC / TravelHealthPro — Indonesia, yellow fever

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The three that need their own answer

Three risks here are genuinely location- or behaviour-dependent rather than list items, so we have given them their own pages rather than flattening them into a bullet:

  • Malaria — the answer is completely different in Papua, in Bali and in Jakarta.
  • Hepatitis B — it is blood-borne, so the risk follows what you do, not where you sleep.
  • Typhoid — food and water, which ties directly to the tap-water question.

Everything else on this page is the standard conversation to have at the pharmacy.

What we can and cannot help with

To be clear about scope: we are not a travel clinic and nothing here is medical advice — your schedule is a conversation with a nurse or pharmacist who can see your records. We are an insurance introducer for international health and life cover for people.

One thing worth knowing from the policy side: failing to get a required vaccination is a general exclusion, so a skipped appointment can affect a later claim. Pre-existing conditions are excluded and cover is governed by the Regency Assurance policy wording.

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Common questions

What vaccinations do I need for Indonesia?

NaTHNaC recommends the routine UK schedule plus hepatitis A for anyone unvaccinated, and typhoid for most travellers. Hepatitis B is worth considering because prevalence is intermediate to high, and Japanese encephalitis is considered depending on length and type of stay.

Do I need vaccinations for Bali specifically?

Bali follows the Indonesia profile — hepatitis A, typhoid and the routine schedule, with hepatitis B and Japanese encephalitis considered. Rabies is the Bali-specific concern, as cases are reported in domestic animals across the island.

Is Japanese encephalitis a risk in Indonesia?

Yes. NaTHNaC states that JE occurs countrywide, including Indonesian Borneo, with year-round risk. Vaccination is considered rather than automatic, weighted by how long you are staying and how rural your travel is.

Do I need a yellow fever certificate for Indonesia?

Only because of where you have travelled from. There is no yellow fever risk in Indonesia itself, but a certificate can be required under the International Health Regulations if you arrive from or transit a country with transmission risk.

Does insurance pay for travel vaccinations?

Only on the upper tiers of the Regency plans, and only for vaccinations directly related to overseas travel requirements. More importantly, failing to get a required vaccination is a general exclusion, so a skipped appointment can affect a later claim.

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